请粘贴蛋白质序列,如果需要输入多个序列,请以fasta格式输入,输入总长度不超过2万个字符。
>testACDEFGHIKLMNPQRSTVWY*
推荐使用IE 8.0以上、chrome或者Firefox等浏览器。
请输入该蛋白来源物种的密码子使用表(GCG格式),下表示大肠杆菌(E.coli)的密码子表(详情请参考:Codon Usage Database.)
AmAcid Codon Number /1000 Fraction .. Gly GGG 50527.00 11.12 0.15Gly GGA 39036.00 8.59 0.12Gly GGT 114185.00 25.14 0.34Gly GGC 130043.00 28.63 0.39 Glu GAG 83804.00 18.45 0.32Glu GAA 179460.00 39.51 0.68Asp GAT 146794.00 32.32 0.63Asp GAC 87759.00 19.32 0.37 Val GTG 115687.00 25.47 0.36Val GTA 51020.00 11.23 0.16Val GTT 86572.00 19.06 0.27Val GTC 67356.00 14.83 0.21 Ala GCG 146264.00 32.20 0.34Ala GCA 93390.00 20.56 0.22Ala GCT 73677.00 16.22 0.17Ala GCC 113412.00 24.97 0.27 Arg AGG 7423.00 1.63 0.03Arg AGA 12345.00 2.72 0.05Ser AGT 41544.00 9.15 0.15Ser AGC 70867.00 15.60 0.26 Lys AAG 51685.00 11.38 0.25Lys AAA 156169.00 34.38 0.75Asn AAT 84846.00 18.68 0.46Asn AAC 98018.00 21.58 0.54 Met ATG 123604.00 27.21 1.00Ile ATA 24233.00 5.34 0.09Ile ATT 135873.00 29.92 0.50Ile ATC 111878.00 24.63 0.41 Thr ACG 63696.00 14.02 0.26Thr ACA 35995.00 7.93 0.15Thr ACT 43256.00 9.52 0.18Thr ACC 103121.00 22.70 0.42 Trp TGG 65630.00 14.45 1.00End TGA 4428.00 0.97 0.30Cys TGT 23461.00 5.17 0.45Cys TGC 28747.00 6.33 0.55 End TAG 1172.00 0.26 0.08End TAA 9006.00 1.98 0.62Tyr TAT 75774.00 16.68 0.58Tyr TAC 55847.00 12.30 0.42 Leu TTG 60322.00 13.28 0.13Leu TTA 62823.00 13.83 0.13Phe TTT 100128.00 22.05 0.57Phe TTC 74885.00 16.49 0.43 Ser TCG 39546.00 8.71 0.15Ser TCA 35837.00 7.89 0.13Ser TCT 42367.00 9.33 0.16Ser TCC 40365.00 8.89 0.15 Arg CGG 25751.00 5.67 0.10Arg CGA 16607.00 3.66 0.07Arg CGT 93997.00 20.70 0.37Arg CGC 96053.00 21.15 0.38 Gln CAG 130898.00 28.82 0.66Gln CAA 67129.00 14.78 0.34His CAT 57585.00 12.68 0.57His CAC 43743.00 9.63 0.43 Leu CTG 231373.00 50.94 0.49Leu CTA 18067.00 3.98 0.04Leu CTT 51442.00 11.33 0.11Leu CTC 48147.00 10.60 0.10 Pro CCG 101467.00 22.34 0.51Pro CCA 38663.00 8.51 0.20Pro CCT 32678.00 7.19 0.17Pro CCC 24383.00 5.37 0.12
如何输入GCG格式的密码子使用表?
1.打开网址:http://www.kazusa.or.jp/codon/
2.找到蛋白来源的物种
3.在"Format"下拉框中选择“1:standard”
4.勾选“A style like CodonFrequency output in GCG Wisconsin PackageTM ”
5.提交
6.复制粘贴,大功告成!